phylobase

The phylobase package seeks to provide a set of S4 classes and methods for representing and manipulating phylogenetic trees and data in R.

Package resources

To install the current release version (0.3, rev. 104): download one of the following and install as appropriate for your platform.
The current version requires ape version 2.1: MacOS users will need to specify install.packages("ape",type="source"), and have development tools installed, to get the right version.)

Source (for Linux, Unix, or MacOS/Windows with development tools installed)
Windows binary
MacOS Intel binary If you require a PowerPC binary please ask on the developer list.

To install the nightly snapshot (on a good day):

Windows or *nix users: install.packages("phylobase", repos="http://r-forge.r-project.org")
MacOS users: install.packages("phylobase", repos="http://r-forge.r-project.org", type = 'source')

Additional information:

A current copy (0.3r104) of the package vignette
The project summary page can found here.
The recent TODO list can be found here.

The phylobase email lists can be accessed and subscribed to from this page.